[vulkan] Removed counter enable for ZPassPixelCount64 in Clear method and added initial layout transition for images in RefreshContents

src/video_core/renderer_vulkan/vk_rasterizer.cpp

@@ -481,7 +481,6 @@ void RasterizerVulkan::Clear(u32 layer_count) {
     scheduler.RequestRenderpass(framebuffer);
 
     query_cache.NotifySegment(true);
-    query_cache.CounterEnable(VideoCommon::QueryType::ZPassPixelCount64, maxwell3d->regs.zpass_pixel_count_enable);
     u32 up_scale = 1;
     u32 down_shift = 0;
     if (texture_cache.IsRescaling()) {

src/video_core/texture_cache/texture_cache.h

@@ -1191,7 +1191,7 @@ void TextureCache<P>::DownloadImageIntoBuffer(typename TextureCache<P>::Image* i
 template <class P>
 void TextureCache<P>::RefreshContents(Image& image, ImageId image_id) {
     if (False(image.flags & ImageFlagBits::CpuModified)) {
-        // Only upload modified images
+        runtime.TransitionImageLayout(image);
         return;
     }