[vk] Partial return of the old buffer update logic (#3690)

Fixes shadows in Metroid Prime Remastered

Reviewed-on: https://git.eden-emu.dev/eden-emu/eden/pulls/3690
Reviewed-by: MaranBr <maranbr@eden-emu.dev>
Reviewed-by: CamilleLaVey <camillelavey99@gmail.com>
Co-authored-by: PavelBARABANOV <pavelbarabanov94@gmail.com>
Co-committed-by: PavelBARABANOV <pavelbarabanov94@gmail.com>

src/video_core/renderer_vulkan/vk_query_cache.cpp

@@ -880,8 +880,6 @@ private:
         }
         has_flushed_end_pending = false;
 
-        // Refresh buffer state before ending transform feedback to ensure counters_count is up-to-date.
-        UpdateBuffers();
         if (buffers_count == 0) {
             LOG_DEBUG(Render_Vulkan, "EndTransformFeedbackEXT called with no counters (buffers_count=0)");
             scheduler.Record([](vk::CommandBuffer cmdbuf) {